OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4339/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    26
Turtle            24
unknown            5
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 50 6071.482143 20714.064396 0.0 159.00 1089.0 2597.75 124680.0
Declaration 50 1160.571429 3336.332373 0.0 75.75 338.0 861.00 22818.0
SubClassOf 48 1488.482143 4505.049660 0.0 13.75 312.0 993.25 24611.0
ObjectPropertyDomain 45 29.607143 33.772328 0.0 7.50 22.0 35.00 133.0
ObjectPropertyRange 45 31.589286 34.265687 0.0 8.75 24.0 36.50 144.0
DataPropertyRange 39 11.714286 19.017422 0.0 0.00 3.0 14.50 97.0
SubObjectPropertyOf 39 48.982143 67.226480 0.0 0.00 26.0 63.25 284.0
InverseObjectProperties 37 11.785714 26.276650 0.0 0.00 2.0 9.50 126.0
DataPropertyDomain 36 10.696429 32.517922 0.0 0.00 2.0 5.00 235.0
DisjointClasses 36 239.285714 1638.855429 0.0 0.00 3.0 20.25 12277.0
ClassAssertion 34 121.714286 377.348631 0.0 0.00 1.5 21.00 1952.0
EquivalentClasses 32 157.482143 820.011463 0.0 0.00 2.5 63.00 6147.0
TransitiveObjectProperty 30 4.089286 6.661359 0.0 0.00 1.0 5.25 32.0
SubDataPropertyOf 26 6.214286 11.831721 0.0 0.00 0.0 9.25 63.0
SubAnnotationPropertyOf 26 12.696429 34.030959 0.0 0.00 0.0 14.00 228.0
FunctionalObjectProperty 23 2.517857 4.225426 0.0 0.00 0.0 4.00 17.0
FunctionalDataProperty 20 1.357143 2.999567 0.0 0.00 0.0 2.00 19.0
InverseFunctionalObjectProperty 20 1.714286 3.166382 0.0 0.00 0.0 1.00 12.0
SymmetricObjectProperty 18 3.142857 6.294091 0.0 0.00 0.0 5.25 35.0
IrrefexiveObjectProperty 17 2.946429 6.159751 0.0 0.00 0.0 1.00 22.0
AnnotationPropertyRangeOf 17 5.660714 18.830610 0.0 0.00 0.0 1.25 134.0
AsymmetricObjectProperty 15 2.428571 5.369466 0.0 0.00 0.0 1.00 20.0
ObjectPropertyAssertion 15 267.321429 1390.881566 0.0 0.00 0.0 2.00 10226.0
DataPropertyAssertion 12 110.964286 508.834675 0.0 0.00 0.0 0.00 3617.0
DisjointUnion 11 5.678571 17.513742 0.0 0.00 0.0 0.00 116.0
SubPropertyChainOf 10 3.232143 16.272667 0.0 0.00 0.0 0.00 120.0
ReflexiveObjectProperty 7 0.160714 0.496416 0.0 0.00 0.0 0.00 3.0
DifferentIndividuals 6 0.339286 1.195093 0.0 0.00 0.0 0.00 6.0
AnnotationPropertyDomain 6 0.214286 0.867898 0.0 0.00 0.0 0.00 6.0
EquivalentObjectProperties 6 1.142857 5.035974 0.0 0.00 0.0 0.00 36.0
DisjointObjectProperties 5 0.357143 1.406848 0.0 0.00 0.0 0.00 8.0
SameIndividual 3 0.553571 2.593135 0.0 0.00 0.0 0.00 17.0
Rule 3 0.660714 3.517627 0.0 0.00 0.0 0.00 25.0
EquivalentDataProperties 3 0.339286 1.564106 0.0 0.00 0.0 0.00 10.0
NegativeObjectPropertyAssertion 2 0.035714 0.187256 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 2 0.357143 2.540069 0.0 0.00 0.0 0.00 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 51 5140.017857 14384.561803 0.0 164.0 1051.0 3932.25 78469.0
ObjectUnionOf 35 14.107143 22.078932 0.0 0.0 4.5 13.00 88.0
ObjectAllValuesFrom 32 28.107143 61.145929 0.0 0.0 5.0 38.50 400.0
ObjectSomeValuesFrom 30 422.767857 2221.866668 0.0 0.0 4.0 109.00 16614.0
ObjectIntersectionOf 28 141.732143 831.113612 0.0 0.0 0.5 19.25 6217.0
ObjectExactCardinality 27 7.750000 22.260646 0.0 0.0 0.0 5.00 115.0
DataExactCardinality 20 2.017857 3.600460 0.0 0.0 0.0 3.00 14.0
DataHasValue 18 29.642857 77.682671 0.0 0.0 0.0 5.00 494.0
DataAllValuesFrom 17 0.964286 1.828703 0.0 0.0 0.0 1.25 8.0
ObjectComplementOf 15 5.160714 24.102642 0.0 0.0 0.0 1.50 179.0
ObjectHasValue 14 9.517857 33.138822 0.0 0.0 0.0 0.25 189.0
ObjectMinCardinality 13 1.446429 4.339751 0.0 0.0 0.0 0.00 28.0
DataSomeValuesFrom 13 1.410714 3.372492 0.0 0.0 0.0 0.00 17.0
ObjectOneOf 11 13.339286 55.139584 0.0 0.0 0.0 0.00 272.0
ObjectMaxCardinality 8 16.767857 119.430618 0.0 0.0 0.0 0.00 894.0
DataMinCardinality 4 0.303571 1.877325 0.0 0.0 0.0 0.00 14.0
DataMaxCardinality 4 1.464286 8.418517 0.0 0.0 0.0 0.00 61.0
ObjectHasSelf 1 0.017857 0.133631 0.0 0.0 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.350 0.556 0.143
17 FOAF 0.345 0.333 0.357
30 OBO 0.339 0.571 0.107
37 PROVO 0.305 0.504 0.107
19 IAO 0.300 0.600 0.000
49 enanomapper 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
41 SEMMD 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
40 SAREF 0.241 0.482 0.000
50 m4i 0.241 0.482 0.000
16 EMMO_microstructure 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
7 DISO 0.222 0.444 0.000
52 mvc 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
36 PMD 0.222 0.444 0.000
28 NanoMine 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
53 opmw 0.200 0.400 0.000
47 WILD 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
54 periodictable 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
45 SSN 0.189 0.378 0.000
33 OSMO 0.189 0.378 0.000
55 ssos 0.155 0.311 0.000
39 QUDV 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000
11 EMMO_Datamodel 0.000 0.000 0.000
51 matinfo 0.000 0.000 0.000
48 bmo 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 56.0 0.222571 0.080094 0.0 0.21625 0.234 0.26675 0.350
score_dash 56.0 0.432232 0.150091 0.0 0.41200 0.467 0.50400 0.600
score_impact 56.0 0.012750 0.054221 0.0 0.00000 0.000 0.00000 0.357

OBO dependency graph